CHANGELOG
Notable changes to agricola (starting with v1.0.0) will be documented here.
v1.5.0 - 2026-09-24
Added
- Debug option to dump block input in step 2
Fixed
- Report pipeline progress in non-interactive jobs
v1.4.0 - 2026-09-12
Added
- Milestone progress logging for batch jobs
v1.3.5 - 2026-09-12
Fixed
- Bug where phenotype column has NULL type in step 2
v1.3.4 - 2026-09-11
Fixed
- Omit reference columns for categorical covariates
v1.3.3 - 2026-09-11
Fixed
- Align NumPy datatypes with JAX
v1.3.2 - 2026-09-10
Fixed
- Bug in _bt_score_lanc computing chisq test before mask is applied
v1.3.1 - 2026-09-10
Fixed
- Use minor instead of coded allele for allele count thresholds
v1.3.0 - 2026-09-10
Added
- Option to specify allele count threshold for genotype (min-ac-h) and ancestry-deconvoluted genotype (min-ac-g)
v1.2.0 - 2026-09-09
Added
- Score test for heterogeneous vs. homogeneous model
- p-het-threshold option to test het vs. hom model only for variants/phenotypes passing P_HET < threshold
- Warm start for _bt_lanc_score
Fixed
- Remove 1-step approximation from v1.1.0
v1.1.0 - 2026-09-08
Added
- Increased tolerance for binary trait tests
- Use 1-step approximation for the null Y ~ offset + L model in _bt_lanc_score
[v1.0.0] - 2026-09-06
- First release version